Python

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Phylogenomics

Phyling

Phyling is a fast, scalable, and user-friendly tool supporting phylogenomic reconstruction of species phylogenies directly from protein-encoded genomic data. It identifies …

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Opencv

AUTOCROP

In high-throughput microbial research, monitoring growth rates across hundreds of samples is a significant logistical challenge. This project was developed to automate the …

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Functional Annotation

dbcanlight

Dbcanlight is a lightweight rewrite of a widely used CAZyme annotation tool run_dbcan. It uses pyhmmer, a Cython binding to HMMER3, in place of the HMMER3 CLI suite as the backend …

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