orthoSynAssign
orthoSynAssign is a high-performance, open-source bioinformatics tool engineered to refine coarse, over-aggregated orthogroups into high-resolution, true orthologs by leveraging …
Nextflow SNP calling workflow
nf_snp_calling is an automated, scalable Nextflow pipeline engineered for high-throughput short-read variant calling, joint regenotyping, and cohort-scale population genomics. …
Microbial Succession in Elk Dung
Herbivore dung decomposition forms a dynamic microscale ecosystem where microbes drive nutrient cycling and organic matter turnover. We investigated microbial succession during …
Phyling
Phyling is a fast, scalable, and user-friendly tool supporting phylogenomic reconstruction of species phylogenies directly from protein-encoded genomic data. It identifies …
dbcanlight
Dbcanlight is a lightweight rewrite of a widely used CAZyme annotation tool run_dbcan. It uses pyhmmer, a Cython binding to HMMER3, in place of the HMMER3 CLI suite as the backend …
IDRs in Fungi
Intrinsically Disordered Regions (IDRs) are polypeptide segments characterized by their structural flexibility. These regions often lack hydrophobic residues, which is the primary …